AT2G02850.1
with_OMAT_gene
<html><body><title>AT2G02850.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u220285001000i/AT2G02850.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u220285001000i/AT2G02850.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u220285001000i/AT2G02850.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123238001000i">AT1G32380.1</a></td><td>0.984447</td><td>ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2)</td><td>OMAT1P011350</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222842001000i">AT2G28420.1</a></td><td>0.978552</td><td>lactoylglutathione lyase family protein / glyoxalase I family protein</td><td>OMAT2P006410</td><td>-</td><td>OMAT2P105650</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224017001000i">AT2G40170.1</a></td><td>0.977049</td><td>GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)</td><td>OMAT2P109920</td><td>-</td><td>OMAT2P010720</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421104001000i">AT4G11040.1</a></td><td>0.975816</td><td>protein phosphatase 2C, putative / PP2C, putative</td><td>OMAT4P002680</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220767701000i">AT2G07677.1</a></td><td>0.970175</td><td>auxin-responsive factor (ARF) -related, low similarity to auxin response factor 10 (Arabidopsis thaliana) GI:6165644</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u526249001000i">AT5G62490.1</a></td><td>0.969771</td><td>ATHVA22B</td><td>OMAT5P019030</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127143001000i">AT1G71430.1</a></td><td>0.969714</td><td>unknown protein</td><td>OMAT1P020460</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121213001000i">AT1G12130.1</a></td><td>0.969533</td><td>flavin-containing monooxygenase family protein / FMO family protein</td><td>OMAT1P004210</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325098001000i">AT3G50980.1</a></td><td>0.968192</td><td>XERO1 (DEHYDRIN XERO 1)</td><td>OMAT3P013565,OMAT3P013560</td><td>[OMAT3P013565]-, [OMAT3P013560]-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521051002000i">AT5G10510.2</a></td><td>0.966593</td><td>AIL6 (AINTEGUMENTA-LIKE 6)</td><td>OMAT5P003520</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122026001000i">AT1G20260.1</a></td><td>-0.935157</td><td>hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism</td><td>OMAT1P007430</td><td>-</td><td>OMAT1P106550</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325624001000i">AT3G56240.1</a></td><td>-0.909217</td><td>CCH (COPPER CHAPERONE)</td><td>OMAT3P113750</td><td>-</td><td>OMAT3P015670</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423353001000i">AT4G33530.1</a></td><td>-0.902808</td><td>KUP5</td><td>OMAT4P109700</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u125441001000i">AT1G54410.1</a></td><td>-0.902646</td><td>dehydrin family protein</td><td>OMAT1P113460</td><td>-</td><td>OMAT1P015140</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423472001000i">AT4G34720.1</a></td><td>-0.887764</td><td>AVA-P1</td><td>OMAT4P110151</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423253002000i">AT4G32530.2</a></td><td>-0.878738</td><td>vacuolar ATP synthase, putative / V-ATPase, putative</td><td>OMAT4P109310</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222796001000i">AT2G27960.1</a></td><td>-0.863704</td><td>CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)</td><td>OMAT2P105540</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522452001000i">AT5G24520.1</a></td><td>-0.863268</td><td>TTG1 (TRANSPARENT TESTA GLABRA 1)</td><td>OMAT5P107300</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u325288002000i">AT3G52880.2</a></td><td>-0.86277</td><td>monodehydroascorbate reductase, putative</td><td>OMAT3P112500</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u122326001000i">AT1G23260.1</a></td><td>-0.861989</td><td>MMZ1 (MMS ZWEI HOMOLOGUE 1)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u220285001000i/AT2G02850.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0048316</td><td>seed development</td><td>18/200</td><td>6.61</td><td>4.54e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>5</td><td>GO:0010154</td><td>fruit development</td><td>18/200</td><td>6.30</td><td>1.01e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0009793</td><td>embryonic development ending in seed dormancy</td><td>14/200</td><td>6.11</td><td>1.26e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>4</td><td>GO:0048608</td><td>reproductive structure development</td><td>20/200</td><td>4.10</td><td>2.40e-08</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0009790</td><td>embryonic development</td><td>14/200</td><td>5.30</td><td>8.06e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0009791</td><td>post-embryonic development</td><td>21/200</td><td>3.55</td><td>1.42e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0003006</td><td>reproductive developmental process</td><td>20/200</td><td>3.63</td><td>1.84e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>B</td><td>3</td><td>GO:0022414</td><td>reproductive process</td><td>20/200</td><td>3.32</td><td>7.90e-07</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0048856</td><td>anatomical structure development</td><td>23/200</td><td>2.57</td><td>1.15e-05</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0007275</td><td>multicellular organismal development</td><td>24/200</td><td>2.26</td><td>6.46e-05</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005739</td><td>mitochondrion</td><td>17/200</td><td>2.66</td><td>8.40e-05</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>dormancy</td><td>-</td><td>15/200</td><td>7.92</td><td>1.01e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ending</td><td>-</td><td>14/200</td><td>7.86</td><td>4.10e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>molecular_function</td><td>-</td><td>88/200</td><td>1.74</td><td>2.40e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>embryonic</td><td>-</td><td>14/200</td><td>6.52</td><td>5.27e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>29/200</td><td>2.21</td><td>1.99e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>development</td><td>-</td><td>19/200</td><td>2.72</td><td>2.57e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G02850&keyword=development">2.18E-15</a></td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>mitochondrion</td><td>-</td><td>16/200</td><td>2.92</td><td>4.10e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>stage</td><td>-</td><td>34/200</td><td>1.76</td><td>4.19e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G02850&keyword=stage">8.35E-16</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cellular_component</td><td>-</td><td>68/200</td><td>1.40</td><td>8.04e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>petal</td><td>-</td><td>26/200</td><td>1.78</td><td>1.46e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>26/200</td><td>1.77</td><td>1.62e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>synthase</td><td>-</td><td>11/200</td><td>2.51</td><td>1.65e-03</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT2G02850&keyword=synthase">3.53E-16</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>26/200</td><td>1.72</td><td>2.42e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cotyledon</td><td>-</td><td>11/200</td><td>2.09</td><td>6.98e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>group</td><td>-</td><td>11/200</td><td>2.04</td><td>8.27e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
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